12/3/2023 0 Comments Samtools macos homebrew![]() ![]() Once installed open the application (Applications>R). To install open the install package (R-3.6.0.pkg) and follow the prompts. (current version is R-3.6.0, Planting of a Tree, ). ![]() ![]() To download, search google for "R download" and follow the links to a CRAN download page of your choosing.ĭownload by clicking the " Download R for (Mac) OS X" link to the pre-compiled binary. R is free software that supports a multitude of statistical and graphic applications. It is an excellent code editor but more importantly it contains the application "make" that you will need to install most ngs applications.Ĭ) Follow the prompts to install ( WARNING - IT is big and will take a while, even on a fast connection) This is software provided by Apple that is used for building applications for Mac computers or iOS devices. Be careful.# This ensures when a vim window closes the edited text disappears export TERM=xterm # Define PATH locations # export PATH=$HOME/local/bin:$PATH # Configure Window Naming Function #Window Naming Function function winname # Alias # This alias allows you to type "ll" in the terminal to execute "ls -lh" alias ll='ls -lh' # Remote connections # These alias's are examples that open connections to a computation resource (standard or ftp connections shown) alias computer='ssh alias cftp='sftp save updated profile (press "esc" then ":w" then ":q" Or perhaps samtools is dependent on a static zlib library, in which case the manual build steps above should get you the static library. So if you're missing the library and header files, that might suggest some other issue with your computer. I'd think a normal OS X installation should have these zlib components available, however - at least the dylib. If you don't have these files, then you might manually install zlib components to /usr: $ cd /tmp You might check that you have libz.a or libz.dylib in /usr/lib and the associated header file zlib.h in /usr/include, where the samtools build tools can find them. Building them requires zlib development files to be installed on the build machine you may need to ensure a package such as zlib1g-dev (on Debian or Ubuntu Linux) or zlib-devel (on RPM/yum-based distributions) is installed. Samtools and HTSlib depend on the zlib library. The gzgetc() function is part of zlib, which is a dependency of samtools. ![]()
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